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Annotation and validation of genes involved in photosynthesis and starch synthesis from a

Yang ZHANG,Xin CHEN,Haiyan WANG,Zhiqiang XIA,Peng LING,Wenquan WANG

Frontiers of Agricultural Science and Engineering 2016, Volume 3, Issue 4,   Pages 308-320 doi: 10.15302/J-FASE-2016113

Abstract: In total, 5013 high-quality expressed sequence tags (ESTs) and 1259 unigenes were obtained.Of these, 746 unigenes were identified by their sequence homologies to ESTs from model plants, and 323From these, 24 differentially expressed genes involved in starch metabolism and photosynthesis were identified

Keywords： Manihot esculenta     expressed sequence tag     unigene     pathway     expression pattern    

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Identification of differentially expressed miRNAs associated with chronic kidney disease–mineral bone

Kyung Im Kim, Sohyun Jeong, Nayoung Han, Jung Mi Oh, Kook-Hwan Oh, In-Wha Kim

Frontiers of Medicine 2017, Volume 11, Issue 3,   Pages 378-385 doi: 10.1007/s11684-017-0541-8

Abstract:

The purpose of this study is to characterize a meta-signature of differentially expressed mRNA incomputational analysis, a meta-signature that characterizes the significant intersection of differentially expressedDifferentially expressed miRNAs associated with CKD-MBD were identified through a computational analysis

Keywords： chronic kidney disease     microRNA     mineral bone disorder     uremia    

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4-1BBL expressed by eukaryotic cells activates immune cells and suppresses the progression of murine

Hui QIU, Hui ZHANG, Zuohua FENG

Frontiers of Medicine 2009, Volume 3, Issue 1,   Pages 20-25 doi: 10.1007/s11684-009-0006-9

Abstract: The function of 4-1BB/4-1BBL expressed by the immune cells has been the focus for many tumor immunotherapyIn this study, 4-1BBL was expressed in non-immune cells and non-tumor cells, and the role of 4-1BBL inThe plasmid p4-1BBL containing the full length of mouse 4-1BBL cDNA sequence was constructed, and theThe study demonstrated that the molecule 4-1BBL expressed by BHK cells could enhance the proliferation

Keywords： 4-1BB ligand     tumor immunotherapy     tumor microenvironment    

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Soluble triggering receptor expressed on myeloid cell-1 (sTREM-1): a potential biomarker for the diagnosis

Changlin Cao, Jingxian Gu, Jingyao Zhang

Frontiers of Medicine 2017, Volume 11, Issue 2,   Pages 169-177 doi: 10.1007/s11684-017-0505-z

Abstract: An example of these biomarkers is triggering receptor expressed on myeloid cell-1 (TREM-1), which isa cell surface receptor expressed on monocytes/macrophages and neutrophils.

Keywords： soluble triggering receptor expressed on myeloid cells-1     infectious diseases     diagnosis and prognosis    

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Alternative splicing of inner-ear-expressed genes

Yanfei Wang,Yueyue Liu,Hongyun Nie,Xin Ma,Zhigang Xu

Frontiers of Medicine 2016, Volume 10, Issue 3,   Pages 250-257 doi: 10.1007/s11684-016-0454-y

Abstract: subject to inner-ear-specific alternative splicing, and as a result, Cdh23(+68) is only expressed

Keywords： alternative splicing     inner ear     hearing loss     hair cells    

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Ant colony optimization for assembly sequence planning based on parameters optimization

Zunpu HAN, Yong WANG, De TIAN

Frontiers of Mechanical Engineering 2021, Volume 16, Issue 2,   Pages 393-409 doi: 10.1007/s11465-020-0613-3

Abstract: As an important part of product design and manufacturing, assembly sequence planning (ASP) has a considerabletypical NP-complete problem that requires effective methods to find the optimal or near-optimal assembly sequenceThe assembly constraints and rules guarantee to obtain a reasonable assembly sequence.SOS) and ant colony optimization (ACO) is proposed to calculate the optimal or near-optimal assembly sequenceSOS-ACO is also robust in identifying the best assembly sequence in nearly every experiment.

Keywords： assembly sequence planning     ant colony optimization     symbiotic organisms search     parameter optimization    

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iTRAQ-based quantitative proteomic analysis on differentially expressed proteins of rat mandibular condylar

Liting Jiang,Yinyin Xie,Li Wei,Qi Zhou,Ning Li,Xinquan Jiang,Yiming Gao

Frontiers of Medicine 2017, Volume 11, Issue 1,   Pages 97-109 doi: 10.1007/s11684-016-0496-1

Abstract: putative signaling in vivo, we evaluated the structural changes of MCC and differentially expressedIsobaric tag for relative and absolute quantitation-based 2D nano-high performance liquid chromatographyA total of 805 differentially expressed proteins were then identified.

Keywords： condylar cartilage     mechanical loading     proteomic analysis     iTRAQ     bioinformatics analysis    

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Development of the expressed immunoglobulin μ chain repertoire during maturation of mice B cells

Jingwen LIANG,Yingfeng LUO,Yi SUN,Meng LEI,Bing ZHANG,Songnian HU,Yaofeng ZHAO

Frontiers of Agricultural Science and Engineering 2014, Volume 1, Issue 3,   Pages 201-213 doi: 10.15302/J-FASE-2014017

Abstract: All these data indicated that the expressed Ig μ chain repertoire, especially the repertoire of CDRH3

Keywords： repertoire     complementarity determining region 3 of the IgH chain (CDRH3)     immunoglobulin     heavy chain     variable region    

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The research of grey clustering decision of assembly sequence based on petri net

Mo Qian,Luo Yi

Strategic Study of CAE 2008, Volume 10, Issue 11,   Pages 65-68

Abstract: according to the intuitionistic graphics mode characteristics of petri net, and gets feasible assembly sequenceMost of factors influencing assembly sequence are certainly qualitative, fuzzy, non-numerical, assemblysequence is regarded as a gray system, and grey clustering decision method is adopted to evaluate feasibleassembly sequence.

Keywords： assembly sequence     petri net     grey clustering decision method    

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Analysis of dispatching rules in a stochastic dynamic job shop manufacturing system with sequence-dependent

Pankaj SHARMA,Ajai JAIN

Frontiers of Mechanical Engineering 2014, Volume 9, Issue 4,   Pages 380-389 doi: 10.1007/s11465-014-0315-9

Abstract:

Stochastic dynamic job shop scheduling problem with consideration of sequence-dependent setup times

Keywords： scheduling     stochastic dynamic job shop     sequence-dependent setup times     dispatching rule     simulation    

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Transforming bacterial disease surveillance and investigation using whole-genome sequence to probe the

Biao Kan, Haijian Zhou, Pengcheng Du, Wen Zhang, Xin Lu, Tian Qin, Jianguo Xu

Frontiers of Medicine 2018, Volume 12, Issue 1,   Pages 23-33 doi: 10.1007/s11684-017-0607-7

Abstract:

Two decades have passed since the first bacterial whole-genome sequencing, which provides new opportunity for microbial genome. Consequently, considerable genetic diversity encoded by bacterial genomes and among the strains in the same species has been revealed. In recent years, genome sequencing techniques and bioinformatics have developed rapidly, which has resulted in transformation and expedited the application of strategy and methodology for bacterial genome comparison used in dissection of infectious disease epidemics. Bacterial whole-genome sequencing and bioinformatic computing allow genotyping to satisfy the requirements of epidemiological study in disease control. In this review, we outline the significance and summarize the roles of bacterial genome sequencing in the context of bacterial disease control and prevention. We discuss the applications of bacterial genome sequencing in outbreak detection, source tracing, transmission mode discovery, and new epidemic clone identification. Wide applications of genome sequencing and data sharing in infectious disease surveillance networks will considerably promote outbreak detection and early warning to prevent the dissemination of bacterial diseases.

Keywords： genome sequencing     genomic epidemiology     bacteria     surveillance     infectious diseases    

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A novel sequence batch membrane carbonation photobioreactor developed for microalgae cultivation

Caiyun Hou, Sen Qiao, Yue Yang, Jiti Zhou

Frontiers of Environmental Science & Engineering 2019, Volume 13, Issue 6, doi: 10.1007/s11783-019-1176-6

Abstract: In this study, a novel sequence batch membrane carbonation photobioreactor was developed for microalgaeThe results in the batch experiments expressed that the relatively optimal pore size of membranes was

Keywords： Membrane carbonation     SBM-C-PBR     Cultivate microalgae     Membrane fouling    

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novel human gene, LY6A, which encodes the candidate ortholog of mouse Ly-6A/Sca-1 and is aberrantly expressed

Frontiers of Medicine 2023, Volume 17, Issue 3,   Pages 458-475 doi: 10.1007/s11684-022-0968-4

Abstract: We found that LY6A is aberrantly expressed in pituitary tumors, but not in normal pituitary tissuesWe cloned the full-length LY6A cDNA, whose encoded protein sequence, domain architecture, and

Keywords： LU domain-containing protein family     novel human gene     LY6A     pituitary tumor     biomarker     nonsynonymous SNP     GPI-anchored protein    

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Assembly design system based on engineering connection

Wensheng YIN

Frontiers of Mechanical Engineering 2016, Volume 11, Issue 4,   Pages 423-432 doi: 10.1007/s11465-016-0382-1

Abstract: this model can significantly reduce the number of combinations, and is very favorable for the assembly sequence

Keywords： product design     assembly design     engineering connection     assembly sequence planning    

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Data mining of microarray for differentially expressed genes in liver metastasis from gastric cancer

Ling XU MM, Feng WANG MM, Xuan-Fu XU MD, Wen-Hui MO BM, Rong WAN MD, Chuan-Yong GUO MD, Xing-Peng WANG MD,

Frontiers of Medicine 2010, Volume 4, Issue 2,   Pages 247-253 doi: 10.1007/s11684-010-0027-4

Abstract: Functional analysis of differentially expressed genes revealed that a variety of biological pathways,mining allows to quickly identify a series of special signal transduction pathways involving abnormally expressed

Keywords： gastric carcinoma     metastasis     signal transduction     gene chips    

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Title Author Date Type Operation

Annotation and validation of genes involved in photosynthesis and starch synthesis from a

Yang ZHANG,Xin CHEN,Haiyan WANG,Zhiqiang XIA,Peng LING,Wenquan WANG

Journal Article

Identification of differentially expressed miRNAs associated with chronic kidney disease–mineral bone

Kyung Im Kim, Sohyun Jeong, Nayoung Han, Jung Mi Oh, Kook-Hwan Oh, In-Wha Kim

Journal Article

4-1BBL expressed by eukaryotic cells activates immune cells and suppresses the progression of murine

Hui QIU, Hui ZHANG, Zuohua FENG

Journal Article

Soluble triggering receptor expressed on myeloid cell-1 (sTREM-1): a potential biomarker for the diagnosis

Changlin Cao, Jingxian Gu, Jingyao Zhang

Journal Article

Alternative splicing of inner-ear-expressed genes

Yanfei Wang,Yueyue Liu,Hongyun Nie,Xin Ma,Zhigang Xu

Journal Article

Ant colony optimization for assembly sequence planning based on parameters optimization

Zunpu HAN, Yong WANG, De TIAN

Journal Article

iTRAQ-based quantitative proteomic analysis on differentially expressed proteins of rat mandibular condylar

Liting Jiang,Yinyin Xie,Li Wei,Qi Zhou,Ning Li,Xinquan Jiang,Yiming Gao

Journal Article

Development of the expressed immunoglobulin μ chain repertoire during maturation of mice B cells

Jingwen LIANG,Yingfeng LUO,Yi SUN,Meng LEI,Bing ZHANG,Songnian HU,Yaofeng ZHAO

Journal Article

The research of grey clustering decision of assembly sequence based on petri net

Mo Qian,Luo Yi

Journal Article

Analysis of dispatching rules in a stochastic dynamic job shop manufacturing system with sequence-dependent

Pankaj SHARMA,Ajai JAIN

Journal Article

Transforming bacterial disease surveillance and investigation using whole-genome sequence to probe the

Biao Kan, Haijian Zhou, Pengcheng Du, Wen Zhang, Xin Lu, Tian Qin, Jianguo Xu

Journal Article

A novel sequence batch membrane carbonation photobioreactor developed for microalgae cultivation

Caiyun Hou, Sen Qiao, Yue Yang, Jiti Zhou

Journal Article

novel human gene, LY6A, which encodes the candidate ortholog of mouse Ly-6A/Sca-1 and is aberrantly expressed

Journal Article

Assembly design system based on engineering connection

Wensheng YIN

Journal Article

Data mining of microarray for differentially expressed genes in liver metastasis from gastric cancer

Ling XU MM, Feng WANG MM, Xuan-Fu XU MD, Wen-Hui MO BM, Rong WAN MD, Chuan-Yong GUO MD, Xing-Peng WANG MD,

Journal Article